FastQCFastQC Report
Sat 13 May 2023
EGAF00000905779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36772792
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG1026500.27914660382600265No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA842650.22915040011103863No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA793840.21587699949462635No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT778260.21164017135277624No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT668030.18166420433890362No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA663880.18053565255529141No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG644730.175327997939346No Hit
GTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGG644490.1752627322940287No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG622230.1692093436908462No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATG620510.168741606566072No Hit
GTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACTCCTGATG578630.1573527514581977No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG541290.1471985048075762No Hit
GTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAG516630.1404924597512204No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC498800.13564376618452034No Hit
GCCGTAGATGCCGTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGG464170.12622647744560705No Hit
TGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGGAAAGTTG464100.1262074416323895No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT455810.12395305746705336No Hit
CCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTG440680.11983860241017326No Hit
GTTGGTATTAGGATTAGGATTGTTGTGAAGTATAGTACGGATGCTACTTG424940.1155582638381116No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC422130.11479411190752119No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGTTTCCAATTAGGTGCA410010.11149819681899595No Hit
GTTTTATGTTGTTAATGTGGTGGGTGAGTGAGCCCCATTGTGTTGTGGTA408830.11117730739618574No Hit
GTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATGGTT404650.11004059740690889No Hit
GTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGGAAAGTTGA402810.10954022745947602No Hit
GGCGTTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGG399180.10855308457405138No Hit
GCTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAAT387510.10537954257049614No Hit
GTTTTCTCGTGTGAATGAGGGTTTTATGTTGTTAATGTGGTGGGTGAGTG378320.10288041223521999No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC371550.10103937715689362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)