FastQCFastQC Report
Sat 13 May 2023
EGAF00000905780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36772792
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC613280.16677547900088738No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG510790.1389043290484987No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC472250.12842375417129057No Hit
CCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTG444920.12099162881077945No Hit
CTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACG420220.11427470614687077No Hit
CTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTT395450.10753874766974453No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA384820.10464802346256438No Hit
CTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGAC382470.10400896401883217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)