FastQCFastQC Report
Thu 5 Jan 2023
EGAF00000905785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34010222
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1023750.30101244267091226No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT977130.2873047991277446No Hit
GTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCA764700.22484416596869022No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG711370.20916358617123995No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG656860.193136051861114No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC651180.19146596573230248No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCA622520.1830390874837571No Hit
GGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTT607230.1785433802813754No Hit
GTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAG606410.17830227629799064No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA592050.17408001629627703No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC590570.17364485300919236No Hit
GCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAG578470.170087099108027No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA560180.16470930416155471No Hit
GTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGG532110.15645590316934715No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT528390.15536211436667482No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT521030.15319805910117257No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT517450.15214543439322448No Hit
GGCCAATTGATTTGATGGTAAGAGAGGGATCGTTGACCTCGTCTGTTATG514850.15138095834834597No Hit
GGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACA512970.1508281833620492No Hit
GCCGTAGATGCCGTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGG504270.14827012890418653No Hit
CCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGT495480.14568561181400108No Hit
GGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGC478980.14083412922150287No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC462720.1360532136485319No Hit
GTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT454960.1337715466838176No Hit
GTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATGGTT448630.13191034154378645No Hit
GTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACTCCTGATG441030.12967571925875698No Hit
GCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGTGGC431290.12681187438294286No Hit
GGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGC423230.12444199864381948No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC422470.12421853641531655No Hit
GCCCATTTGAGTATTTTGTTTTCAACTAGGGAGATAGTTGGTATTAGGAT419470.12333644867122598No Hit
GTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTA416870.12257197262634746No Hit
CTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAA406860.1196287398535652No Hit
GTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGA399900.11758229628727505No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA397030.11673843234542838No Hit
GTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCC395260.11621800057641495No Hit
GTAGGTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGA389300.11446558625815496No Hit
CGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATA387650.11398043799890516No Hit
GGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGT371970.10937005938979169No Hit
GTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGA370830.10903486604703727No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT369330.10859382217499197No Hit
CTTTTTTTCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCT368280.10828509146456028No Hit
CGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATA367890.10817042005782851No Hit
CCGGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTG366020.10762058536401203No Hit
GTGGAGTGTGGCGAGTCAGCTAAATACTTTGACGCCGGTGGGGATAGCGA363680.10693255692362139No Hit
GTCCTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATT358220.10532715722937651No Hit
GGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGGCTTCTCAAAT353560.10395698093355579No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG350310.10300138587745766No Hit
GGGGATTATTGCTAGGATGAGGATGGATAGTAATAGGGCAAGGACGCCTC342690.10076088300746758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)