FastQCFastQC Report
Sun 2 Apr 2023
EGAF00000905786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34010222
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG1052290.3094040374096941No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC686660.20189812345241379No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC607010.17847869384680876No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC606420.17830521659047094No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC567470.16685277737969487No Hit
CCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACT533840.15696457376843936No Hit
CCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA508950.14964618578496783No Hit
CCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACT501710.14751741402922922No Hit
CCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGC478220.14061066699299993No Hit
CTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTT454710.13369803937181005No Hit
CCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCT428000.12584451815692352No Hit
AAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACC425910.12522999702854043No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC416850.12256609204138685No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT416570.12248376385193839No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA395210.11620329911401343No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA389810.11461554117465036No Hit
CAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCT388730.11429798958677777No Hit
GCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTC386450.11362760290126893No Hit
CCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCA383540.11277197778950104No Hit
TATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACA383020.11261908258052535No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG372540.10953765606116891No Hit
CTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATG365800.10755589892944539No Hit
GGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCA354070.1041069358500512No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC352040.10351005647654991No Hit
CCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCC346070.10175470186580962No Hit
CTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTT343190.10090789763148268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)