FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000905787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29280922
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT863830.29501461736758156No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG795270.27160005412397875No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA587580.20066991059912664No Hit
GGCCAATTGATTTGATGGTAAGAGAGGGATCGTTGACCTCGTCTGTTATG545240.18620998341513972No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATTAGGTGCA456440.15588306952902645No Hit
GTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCA416780.14233841407043124No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG409090.13971213064943788No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG397090.13561389904320637No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC380020.129784164583342No Hit
GGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACA376960.12873911552375297No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT375190.12813462636183381No Hit
CTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATTAGT373680.1276189322180497No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA367370.12546394543177294No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC361080.1233157890315066No Hit
GTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGG360830.12323040920637676No Hit
CCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGT348970.11917999030221794No Hit
GTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAATAATGGGGGAAGTATGT340320.11622584835272605No Hit
GCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAG336090.11478122171152944No Hit
GTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAG334910.11437822893691667No Hit
GGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTT331540.11322730889416666No Hit
CTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCA331000.11304288847188623No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA330670.11293018710271487No Hit
GCCGTAGATGCCGTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGG328350.11213786232551011No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT326100.11136944389934168No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC323800.11058394950814732No Hit
GTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAAGGTTAATGGTT321260.10971649048482832No Hit
GTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACTCCTGATG315070.10760248601461389No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG312360.1066769687102066No Hit
GGGGAATTAATTCTAGGACGATGGGCATGAAGCTGTGGTTTGCTCCACAG304220.10389700160397955No Hit
GTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGATAT303750.10373648753273547No Hit
CTTTTTTTCCGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCT303010.1034837632503512No Hit
GTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCC299380.10224404818946617No Hit
GTCCTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATT297530.10161223748350547No Hit
CTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCG294470.10056718842391645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)