FastQCFastQC Report
Wed 14 Sep 2022
EGAF00000905849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21575518
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT572200.2652080010315395No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT386680.17922165298650072No Hit
GGCAAAATGATTAAAGAAATTTATGTTTTTTAGACAGGGTGTTGGCTTTA342610.1587957239311705No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA335940.15570425701946067No Hit
CACATCTTATCGCATCCACTCCTGTCCACTCCCGTCCACTTTGCCCTCTT335380.15544470357559897No Hit
AGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTT332620.1541654758879949No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC329640.1527842807760166No Hit
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC327610.15184339954201795No Hit
ATTTTTTATTAATTGAAGCACAGAGAAAAGAGGCAAAATGATTAAAGAAA325160.15070785322512303No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT307270.1424160476703271No Hit
GTCAAAAGAAAGCTCTTTATTGATTGACTCAGCAATGCAGGGCTGGCACC305080.1414010083095108No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA299380.13875912504163285No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA295450.13693761605167487No Hit
CTCCTGTCCACTCCCGTCCACTTTGCCCTCTTCCAGGCTGAAATCTTGCT274000.1269957921751867No Hit
GTCCACTTTGCCCTCTTCCAGGCTGAAATCTTGCTTTCAGGCAAGGGCTT260180.12059038397131416No Hit
CTCTTATTCTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGC245220.11365659911386601No Hit
GTTGAACTTGACCTCGGGGGGGATAGACATGGGTATGGCCTCTAAAAACA231760.10741804669533311No Hit
CTCAGCAATGCAGGGCTGGCACCCATCAGCTTCAAACCACATCTTATCGC229850.10653278405644767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)