FastQCFastQC Report
Fri 17 May 2024
EGAF00000911311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000911311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112295161
Total Bases8.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2440730.2173495258624724No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1625910.14478896379159206No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1188400.10582824668642667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)