FastQCFastQC Report
Wed 14 Sep 2022
EGAF00000923161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000923161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19672341
Sequences flagged as poor quality0
Sequence length100
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT4070612.0692046767591106TruSeq Adapter, Index 14 (97% over 44bp)
CGGGGACTTATCAGCCAACCTGTTACTGCCGGCCCACCCCCAGGGCCAGC261790.13307516375402398No Hit
CGGGGACTTATCAGCCAACCTGTTATGTGGCACAAACCCGGATCCGCAGC232910.11839465369169841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)