FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000923761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000923761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112775
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGACGGAATCTCGTA17431.5455553092440701TruSeq Adapter, Index 7 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGACGGAATCTCGTAT3840.3405009975615163TruSeq Adapter, Index 7 (97% over 37bp)
CCGGGGCATAAAAGTAAGGATGTCTTCTGGCAATTTCATATAAGTATTTT1170.1037463976945245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)