FastQCFastQC Report
Fri 9 Sep 2022
EGAF00000923841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000923841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA72060.3603No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCTTAATCTCGTAT55510.27755TruSeq Adapter, Index 1 (97% over 36bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC54110.27055No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC25470.12735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)