FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000924486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000924486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCC26980.1349No Hit
GAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCA25440.12719999999999998No Hit
TGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGGAAACCTGGTGTCTGTGC25230.12615No Hit
CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG24530.12265No Hit
GCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAG23990.11995No Hit
CAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCG22450.11225No Hit
GCCGGGGCTTGAGATGGTGGAGGGATTTCTCTCCCATGCAAAGTAATTCA20520.1026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)