FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000925407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000925407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1063490
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA18920.17790482280040243No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAGCCAATCTCGTA15420.14499431118299186TruSeq Adapter, Index 7 (97% over 37bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC12400.11659724115882612No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAGCCAATCTCGTAT12280.11546888076051491TruSeq Adapter, Index 7 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)