FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000925463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000925463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC55520.27759999999999996No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA52070.26034999999999997No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCTTAATCTCGTAT30810.15405TruSeq Adapter, Index 1 (97% over 36bp)
GGGGTCTACAACCAGCATATCTTCATGGCTGTGAAATTCATGGCTGTGGA27430.13715000000000002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)