FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000927458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000927458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCC28670.14335No Hit
TGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGGAAACCTGGTGTCTGTGC28630.14315No Hit
CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG27520.1376No Hit
GCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAG26560.1328No Hit
GAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCA26510.13255No Hit
CAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCG24350.12175000000000001No Hit
GCCGGGGCTTGAGATGGTGGAGGGATTTCTCTCCCATGCAAAGTAATTCA22850.11425No Hit
GAGGGATCCTTCGTGTCCTCCCTGGTGAAGAGCATTGGTAACAGCTACTC21120.10560000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)