FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000927664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000927664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1269082
Sequences flagged as poor quality0
Sequence length100
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA142201.120494971956107No Hit
GCCTGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC33540.2642855229212927No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC27430.21614048579997194No Hit
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC17640.13899811044518795No Hit
ACTCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGG17590.1386041248713637No Hit
ACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGG17110.13482186336265112No Hit
CACCCGTTTACCTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAA14630.11528017890096937No Hit
GCCGTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA14480.11409822217949668No Hit
CACTCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACG12740.10038752421041351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)