FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000928247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCC89240.4462No Hit
CTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTC37180.1859No Hit
CTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTC32030.16015000000000001No Hit
CGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACGGGCGCCCG24680.12340000000000001No Hit
CAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGA23100.1155No Hit

[OK]Adapter Content

Adapter graph