FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000928251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCC88870.44435No Hit
CTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTC35640.1782No Hit
CTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTC32430.16215No Hit
CAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGA23960.1198No Hit
CGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACGGGCGCCCG23440.11720000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)