FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000928347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCAGAAGACGGCATACGAGATCAGATCGGAAGAGCGTCGTGTAGGGA27340.1367Illumina PCR Primer Index 9 (96% over 31bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC25790.12895Illumina Single End PCR Primer 1 (100% over 50bp)
GCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCG21220.10610000000000001No Hit
GCGAGAATGAAGACTATTCTCAGCAATCAGACTGTCGACATTCCAGAAAA20740.1037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)