FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000928498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences832268
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA42340.5087303608933661No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC39040.4690796714519842No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT23910.28728726804346677TruSeq Adapter, Index 9 (97% over 38bp)
AATGATACGGCGACCACCGAGAACTCCAGTCACACCACTGTATCTCGTAT15650.18804039083564428Illumina Single End PCR Primer 1 (96% over 25bp)
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC14390.1729010366852985No Hit
CCCGCTTTGGGCTGCATTCCCAAGCAACCCGACTCCGGGAAGACCCGGGC10600.12736282062989326No Hit
GCCCGGTTTCGGGTCTATTCCCAGCGACTAGACGCCCTATTAAGACTCGC10190.12243652285081248No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT10070.12099467959839859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)