FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000928559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1659014
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC18890.1138628124898283Illumina Single End PCR Primer 1 (100% over 50bp)
GCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCG17300.10427880656823872No Hit
GCGAGAATGAAGACTATTCTCAGCAATCAGACTGTCGACATTCCAGAAAA17080.10295271769858481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)