FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000928628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000928628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences857075
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACAACCAATCTCGTA76010.8868535425721203TruSeq Adapter, Index 1 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACAACCAATCTCGTAT14800.17268033719336112TruSeq Adapter, Index 1 (97% over 37bp)
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA14310.1669632179214188No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC12760.14887845287751947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)