FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000930054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000930054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1121841
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGGCATAATCTCGTAT16570.14770364071200823TruSeq Adapter, Index 20 (97% over 38bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC11720.1044711327184512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)