FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000930423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000930423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173839
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGTTA3870.22261978037149316No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA2530.1455369623617255No Hit
ACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGG1820.10469457371475907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)