FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000930643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000930643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1920375
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCAGTTCAATCTCGTAT22340.11633144568118205TruSeq Adapter, Index 5 (97% over 38bp)
GCCCGGTTTCGGGTCTATTCCCAGCGACTAGACGCCCTATTAAGACTCGC19630.10221961856408254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)