FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000931379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000931379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTTCTGGGAGGACAGGTAGGTGGGCTCGACTCCCACGGTGCAGTAG40790.20395000000000002No Hit
GGTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTG35480.1774No Hit
GGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGG31420.1571No Hit
GCAGGGTCAAGAGGAAGAGGGGAGCCCACGTGTCGAGGCAGCAAGTCTAG31150.15575No Hit
GCCCTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGAT30550.15275No Hit
TGGCCGTTCTGGGAGGACAGGTAGGTGGGCTCGACTCCCACGGTGCAGTA28250.14125No Hit
GGGCCGGTCAGCAGAGAGGTGCCGGTGTCAACAATGGCCTGGCAGCCCTC23140.1157No Hit
TGGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGG21890.10944999999999999No Hit
GCCGGTGTCAACAATGGCCTGGCAGCCCTCAGCGCAGGCGATGGCCTCTC21370.10685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)