FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000931383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000931383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTTCTGGGAGGACAGGTAGGTGGGCTCGACTCCCACGGTGCAGTAG42770.21385No Hit
GGTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTG36280.1814No Hit
GGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGG33150.16574999999999998No Hit
GCCCTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGAT31640.1582No Hit
GCAGGGTCAAGAGGAAGAGGGGAGCCCACGTGTCGAGGCAGCAAGTCTAG31380.1569No Hit
TGGCCGTTCTGGGAGGACAGGTAGGTGGGCTCGACTCCCACGGTGCAGTA27050.13525No Hit
GGGCCGGTCAGCAGAGAGGTGCCGGTGTCAACAATGGCCTGGCAGCCCTC24410.12205No Hit
TGGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGG21940.1097No Hit
GCCGGTGTCAACAATGGCCTGGCAGCCCTCAGCGCAGGCGATGGCCTCTC21370.10685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)