FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000931399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000931399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1426853
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTTCTGGGAGGACAGGTAGGTGGGCTCGACTCCCACGGTGCAGTAG18640.13063714341981972No Hit
GGTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTG16280.11409724757911292No Hit
GCAGGGTCAAGAGGAAGAGGGGAGCCCACGTGTCGAGGCAGCAAGTCTAG15690.10996227361893622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)