FastQCFastQC Report
Sat 10 Sep 2022
EGAF00000931627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000931627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA46120.2306No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACACAGAAATCTCGTAT36680.18339999999999998TruSeq Adapter, Index 23 (97% over 37bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC22280.1114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)