FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000934758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000934758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCC29610.14805000000000001No Hit
GAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCA28210.14105No Hit
TGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGGAAACCTGGTGTCTGTGC27920.1396No Hit
GCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAG27070.13535No Hit
CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG27060.1353No Hit
CAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCG24020.1201No Hit
GCCGGGGCTTGAGATGGTGGAGGGATTTCTCTCCCATGCAAAGTAATTCA22870.11435No Hit
GAGGGATCCTTCGTGTCCTCCCTGGTGAAGAGCATTGGTAACAGCTACTC21780.1089No Hit
CCTATGTCTGCAAGTTCACTGACTAGTGCAGGAGGGAAGTCAGCAGCCTG20710.10355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)