FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000934760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000934760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCC29240.1462No Hit
TGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGGAAACCTGGTGTCTGTGC28390.14195No Hit
CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG27110.13555No Hit
GAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCA27020.1351No Hit
GCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAG25310.12655No Hit
CAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCG24080.1204No Hit
GCCGGGGCTTGAGATGGTGGAGGGATTTCTCTCCCATGCAAAGTAATTCA23170.11585000000000001No Hit
GAGGGATCCTTCGTGTCCTCCCTGGTGAAGAGCATTGGTAACAGCTACTC22020.1101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)