FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000934768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000934768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCC30920.15460000000000002No Hit
GAGCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCA27870.13935No Hit
TGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGGAAACCTGGTGTCTGTGC27760.13879999999999998No Hit
CCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAGCGGCCCTCTGG27730.13865No Hit
GCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAG26660.1333No Hit
CAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCG24730.12365No Hit
GCCGGGGCTTGAGATGGTGGAGGGATTTCTCTCCCATGCAAAGTAATTCA22950.11475No Hit
GAGGGATCCTTCGTGTCCTCCCTGGTGAAGAGCATTGGTAACAGCTACTC22720.1136No Hit
CCTATGTCTGCAAGTTCACTGACTAGTGCAGGAGGGAAGTCAGCAGCCTG20350.10175No Hit
GTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGC20320.1016No Hit
GGTTACCCTATGTCTGCAAGTTCACTGACTAGTGCAGGAGGGAAGTCAGC20280.10139999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)