FastQCFastQC Report
Fri 9 Sep 2022
EGAF00000934859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000934859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGATACGGCGACCACCGAGAACTCCAGTCACAGTACAAGATCTCGTAT38460.1923Illumina Single End PCR Primer 1 (96% over 25bp)
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA35410.17704999999999999No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTACAAGATCTCGTAT31230.15614999999999998TruSeq Adapter, Index 14 (97% over 38bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC31030.15514999999999998No Hit
GTCCCCAGTGGCTTTTCCAGAACTACTGCCTTCACCATGAAGCTCCATGA22680.1134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)