FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000934935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000934935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1158202
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC14430.12458966570598219No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT14300.12346723628520759TruSeq Adapter, Index 9 (97% over 38bp)
CCCAAATTCTAAGCAGAGTATGTAAATTGGAAGTTAACTTATGCACGCTT14200.12260382903845789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)