FastQCFastQC Report
Wed 8 May 2024
EGAF00000935344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000935344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Total Bases200 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC145140.7257Illumina Single End PCR Primer 1 (100% over 50bp)
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC47200.23600000000000002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)