FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000935459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000935459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA61450.30725No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC37230.18615No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGACTGGAATCTCGTAT29840.1492TruSeq Adapter, Index 23 (97% over 38bp)
GTTGGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTG21710.10855000000000001No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT20200.101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)