FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000936390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000936390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25302761
Sequences flagged as poor quality0
Sequence length35
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAAGAGTCGCATATCTAACTCCCACCAGGTAT2011899679.5130460268743No Hit
GATCGAGAGTCGCATATCTAACTCCCACCAGGTAT271920810.746684917112406No Hit
GATCAAGGGTCGCATATCTAACTCCCACCAGGTAT647320.2558297886938109No Hit
GATCAGGAGTCGCATATCTAACTCCCACCAGGTAT610610.24132149056776847No Hit
GATCAAGAGTCGCATACCTAACTCCCACCAGGTAT542880.2145536607645308No Hit
GATCAAGAGTCGCATATCTAACCCCCACCAGGTAT506050.1999979369840311No Hit
GATCAAGAGCCGCATATCTAACTCCCACCAGGTAT480780.1900108845829117No Hit
GATCAAGAGTCGCATATCTAACTCCCACCAGGTAC445810.17619025844649916No Hit
GATCAAGAGTCGCATATCTAACTCCCACCAGGCAT412830.16315610774650247No Hit
GATCAAGAGTCGCGTATCTAACTCCCACCAGGTAT384920.1521256909473239No Hit
GATCAAGAGTCGCATATCCAACTCCCACCAGGTAT382240.15106651799777898No Hit
GATCAAGAGTCGCATATCTAACTCCCGCCAGGTAT380330.15031165966433466No Hit
GATCGGGAGTCGCATATCTAACTCCCACCAGGTAT366970.14503160346809582No Hit
GATCAAGAGTCGCATATCTAGCTCCCACCAGGTAT365770.14455734692352348No Hit
GATCAAGAGTCGCATATCTAACTCCCACCGGGTAT357020.14109922628601676No Hit
GATCAAGAGTCGCATATCTAACTCCCACCAGGTGT337110.1332305197839872No Hit
GATCAAGAGTCGCACATCTAACTCCCACCAGGTAT313360.12384419233932613No Hit
GATCAAGAGTCGCATGTCTAACTCCCACCAGGTAT283430.11201544369011744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)