FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000936391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000936391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14465384
Sequences flagged as poor quality0
Sequence length35
%GC26

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCATAATTGTTTCTTCACTTTATTCTTAAAAAA895490161.905726111384254No Hit
GATCATAATTGTTTCTTCACTTTATTCTAAAAAAA1657681.1459633563823817No Hit
GATCCAAGTATGAACACATTAGTCTTTCCCTAATG1534521.0608221669054898No Hit
GATCCTTATCTTTTAATAACCAACCCCCCACTTTC873220.6036618177574823No Hit
GATCCAGAGTGTCTTTGCTTGGGTTTCTTGTTTGA676140.4674193232616569No Hit
GATCGTAATTGTTTCTTCACTTTATTCTTAAAAAA588300.40669504521967753No Hit
GATCTTACTGACTTGCACCTGTTTGAAGGTAAATG571700.39521937336748203No Hit
GATCCAGCCTGCTCTTGCCTTACCATGGGAGAAGG417650.2887237559680407No Hit
GATCATAATTGTTTCTTCACTTTATTCTTAAGAAA381690.2638644089918387No Hit
GATCATAATTGTTTCTTCACTTTATTCTTAAAGAA367770.2542414359687928No Hit
GATCTGGCAATAATCTGATTCTTGTTCTGAGGCTT362200.2503908641485079No Hit
GATCATAATTGTTTCTTCACTTTATTCTTAAAAAG361050.24959586278525342No Hit
GATCATAATTGCTTCTTCACTTTATTCTTAAAAAA357870.24739751118947137No Hit
GATCATAATTGTTTCCTCACTTTATTCTTAAAAAA342580.23682744958585267No Hit
GATCATAATTGTTTCTTCACTTTATTCTTAAAAGA337370.2332257477575431No Hit
GATCATAATTGTTTCTTCACTTTATTCTTAGAAAA331990.22950652398857851No Hit
GATCATAATTGTTTCTTCACCTTATTCTTAAAAAA322260.22278012114991208No Hit
GATCATAATTGTTTCTTCGCTTTATTCTTAAAAAA314670.21753311215243232No Hit
GATCTCATTTCTCATTACTGCAGACCTTCGAGCAA301840.20866366216064502No Hit
GATCATAATTGTTTCTCCACTTTATTCTTAAAAAA298270.20619570140688973No Hit
GATCATAATTGTTTCTTCACTTTATCCTTAAAAAA295740.2044466984077298No Hit
GATCATAATTGTCTCTTCACTTTATTCTTAAAAAA295390.2042047414710871No Hit
GATCATAATTGTTTCTTCACTTTATTCCTAAAAAA291470.20149482378068911No Hit
GATCATAGTTGTTTCTTCACTTTATTCTTAAAAAA290040.20050625686812046No Hit
GATCAACTATCACTGGACTCGTCAGGAAGATTCAA287540.1987779930349585No Hit
GATCATAATTGTTCCTTCACTTTATTCTTAAAAAA276700.19128424105436814No Hit
GATCATAATTGTTTCTTCACTTTACTCTTAAAAAA272860.18862962780663134No Hit
GATCATAATTGTTTCTTCACTCTATTCTTAAAAAA259730.1795527861548646No Hit
GATCTGTAGATTCAATAAAATCAAATCAGAATCCC256650.17742356511240906No Hit
GATCATAATCGTTTCTTCACTTTATTCTTAAAAAA247970.17142303308367066No Hit
GATCATAACTGTTTCTTCACTTTATTCTTAAAAAA207890.14371550731041774No Hit
GATCATGATTGTTTCTTCACTTTATTCTTAAAAAA207420.1433905937097833No Hit
GATCTCATTGCCTATCGAGAATTCATGAGGAGACT201770.13948471744683724No Hit
GATCTATGCAAATTATCAGTCTTCCTTACTTGCCT199880.13817814998896674No Hit
GATCATAATTGTTTCTTCACTTTATTCTTGAAAAA195170.1349221009272896No Hit
GATCTGCTTTCAGCTGTAGTGAAGCAAACTGCATA194160.13422388233869215No Hit
GATCGTTGTGAAGATAGTGTACTTTCTCCAGTTGA190230.13150705159296153No Hit
GATCTAACTTAAGTTTTTCTTTCAGTTTTGAAGGC189890.13127200771165148No Hit
GATCATAATTGTTTCTTCACTTTGTTCTTAAAAAA187190.12940548277183656No Hit
GATCTACATAAAATACTTATGTGGCCTTTTTTTTT182950.12647434731079382No Hit
GATCAAGTCCTACCTCCTCTGTAAAGCAGTCCCTG171170.11833076812893456No Hit
GATCCCTGGTAGGATACTCAGAGATGGCCCCAATC168160.11624993847380753No Hit
GATCACAATTGTTTCTTCACTTTATTCTTAAAAAA166760.11528211072723683No Hit
GATCATAATTGTTTCTTCACTTCATTCTTAAAAAA164470.11369902105606046No Hit
GATCACATGAGAAAGTGGTATTTGAGTTTGAGGTT148110.10238926253184845No Hit
GATCAGCCACTTTCATTTACGTTCATTATTACACC147980.10229939281252404No Hit
AATCATAATTGTTTCTTCACTTTATTCTTAAAAAA144870.10014943260407053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)