FastQCFastQC Report
Tue 5 Sep 2023
EGAF00000976694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000976694
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences52844448
Sequences flagged as poor quality0
Sequence length90
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT759150.14365747561598147No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC636270.1204043232696839No Hit
GTTTTCTCGTGTGAATGAGGGTTTTATGTTGTTAATGTGGTGGGTGAGTG633930.11996151421621434No Hit
AAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTA624850.11824326370104196No Hit
CTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACG596040.11279141377349614No Hit
GTTTGAAGTCCTTGAGAGAGGATTATGATGCGACTGTGAGTGCGTTCGTA551290.10432316371248689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)