FastQCFastQC Report
Wed 15 May 2024
EGAF00000976695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000976695
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences52844448
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT780410.14768060402485422No Hit
AAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTA627080.11866525694430569No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC603880.11427501333725731No Hit
CTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACG554570.10494385332589717No Hit
GTTTTCTCGTGTGAATGAGGGTTTTATGTTGTTAATGTGGTGGGTGAGTG550290.10413392907425204No Hit
GTTTGAAGTCCTTGAGAGAGGATTATGATGCGACTGTGAGTGCGTTCGTA533600.10097560296211251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)