FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001010404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34728834
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG482170.13883852247962025No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG464710.13381099981646374No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT430570.12398055172252545No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT389260.11208553676175824No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC383610.11045864655289032No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATG373540.10755903869389914No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA370260.1066145785372466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)