FastQCFastQC Report
Thu 1 Jun 2023
EGAF00001010452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35508261
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT576640.16239601257859404No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT419640.11818094949792106No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT377480.10630765612542953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)