FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001010528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24730350
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT343060.13872023647057158No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC273450.1105726364568233No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA264110.10679590058369574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)