FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001010532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51049044
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT1021520.20010560824606236No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT944920.18510043008836757No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT654030.1281179721994402No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA624420.12231766769226864No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATA574820.11260152100007983No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC562100.1101097995096637No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG526500.10313611357736689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)