FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001010604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60684441
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA2238390.3688573155020082No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC1881540.3100531155918533No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT702360.11573971654447637No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATGCAATCTCGTAT671460.11064780179815778TruSeq Adapter, Index 8 (97% over 36bp)

[OK]Adapter Content

Adapter graph