FastQCFastQC Report
Tue 4 Apr 2023
EGAF00001010612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61337275
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT1144770.18663528824845904No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT953960.15552696137870486No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATA924360.15070118455702508No Hit
GTCGCCTGTTCACCAAGGATTCTGTGCAGCATTTGGTGACTCTGTCACTT748170.12197640015797898No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA714890.11655066189360384No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA666170.10860769409792007No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG656310.10700018871069834No Hit
GTGCATATATCTGCATGGAAGGTGAATGTTTCAGCATTAAACTCTTTGGG615710.10038104888096186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)