FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001010688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30090351
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT609550.20257324349589675No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT594380.19753176026427877No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC418190.13897810630391116No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT406110.134963530335688No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA399130.13264384985073788No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT383890.12757910334778083No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA330920.10997545359308039No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG327150.10872256026524915No Hit
ATTTTTTATTAATTGAAGCACAGAGAAAAGAGGCAAAATGATTAAAGAAA325270.10809777526357203No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA316710.10525300951125495No Hit
AGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTT314480.10451190815288264No Hit
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC311690.10358470062379796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)