FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001010698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27847204
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT645690.23186887990621968No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT465580.16719093234638566No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA420540.151016956675435No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT383640.13776607518657888No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC376410.13516976426071356No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA375790.13494712072350243No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA360540.12947080791306734No Hit
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC323700.11624147257297357No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT313690.11264685675445191No Hit
AGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTT312350.11216565943209236No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT288510.10360465632384493No Hit
GGCAAAATGATTAAAGAAATTTATGTTTTTTAGACAGGGTGTTGGCTTTA287510.10324555384447213No Hit
ATTTTTTATTAATTGAAGCACAGAGAAAAGAGGCAAAATGATTAAAGAAA279350.10031527761279013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)