FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001010703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55416977
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATTTAAAAGCATCTCAGCCTACCATGAGAATAAGAGAAAGAAAATGA725860.13098152214257375No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA619950.1118700502194481No Hit
GTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTATGGA577340.1041810707213423No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC568660.10261476370318794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)