FastQCFastQC Report
Mon 13 May 2024
EGAF00001010774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92380587
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1635160.17700255574258258No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG1451170.15708603367068885No Hit
GGAGAATGGGGGATAGGTGTATGAACATGAGGGTGTTTTCTCGTGTGAAT1021770.11060440652969655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)