FastQCFastQC Report
Wed 22 May 2024
EGAF00001010780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences147658573
Total Bases11 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15222301.0309120351582972No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG2242160.15184760047762347No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1736770.11762066805291421No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG1622940.1099116676415395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)